Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG18191.1 | SHG18774.1 | SAMN04488116_0130 | SAMN04488116_0162 | HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Protein of unknown function. | 0.687 |
SHG18191.1 | SHG24903.1 | SAMN04488116_0130 | SAMN04488116_0545 | HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | RNA polymerase Rpb6. | 0.433 |
SHG18191.1 | SHG53795.1 | SAMN04488116_0130 | SAMN04488116_1663 | HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Transcriptional regulator, TraR/DksA family. | 0.444 |
SHG18191.1 | SHG99202.1 | SAMN04488116_0130 | SAMN04488116_3140 | HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | Hypothetical protein. | 0.468 |
SHG18774.1 | SHG18191.1 | SAMN04488116_0162 | SAMN04488116_0130 | Protein of unknown function. | HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. | 0.687 |
SHG18774.1 | SHG20012.1 | SAMN04488116_0162 | SAMN04488116_0233 | Protein of unknown function. | Putative negative regulator of RcsB-dependent stress response. | 0.627 |
SHG18774.1 | SHG24903.1 | SAMN04488116_0162 | SAMN04488116_0545 | Protein of unknown function. | RNA polymerase Rpb6. | 0.652 |
SHG18774.1 | SHG53795.1 | SAMN04488116_0162 | SAMN04488116_1663 | Protein of unknown function. | Transcriptional regulator, TraR/DksA family. | 0.667 |
SHG18774.1 | SHG76914.1 | SAMN04488116_0162 | SAMN04488116_2460 | Protein of unknown function. | Protein of unknown function. | 0.770 |
SHG18774.1 | SHG82559.1 | SAMN04488116_0162 | SAMN04488116_2574 | Protein of unknown function. | Beta-barrel assembly machine subunit BamA. | 0.690 |
SHG18774.1 | SHG99202.1 | SAMN04488116_0162 | SAMN04488116_3140 | Protein of unknown function. | Hypothetical protein. | 0.667 |
SHG18774.1 | rpmF | SAMN04488116_0162 | SAMN04488116_1818 | Protein of unknown function. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.663 |
SHG18774.1 | rpsU | SAMN04488116_0162 | SAMN04488116_3210 | Protein of unknown function. | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. | 0.625 |
SHG18774.1 | secA | SAMN04488116_0162 | SAMN04488116_0161 | Protein of unknown function. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.663 |
SHG20012.1 | SHG18774.1 | SAMN04488116_0233 | SAMN04488116_0162 | Putative negative regulator of RcsB-dependent stress response. | Protein of unknown function. | 0.627 |
SHG20012.1 | SHG24903.1 | SAMN04488116_0233 | SAMN04488116_0545 | Putative negative regulator of RcsB-dependent stress response. | RNA polymerase Rpb6. | 0.522 |
SHG20012.1 | SHG53795.1 | SAMN04488116_0233 | SAMN04488116_1663 | Putative negative regulator of RcsB-dependent stress response. | Transcriptional regulator, TraR/DksA family. | 0.472 |
SHG20012.1 | SHG76914.1 | SAMN04488116_0233 | SAMN04488116_2460 | Putative negative regulator of RcsB-dependent stress response. | Protein of unknown function. | 0.436 |
SHG20012.1 | SHG82559.1 | SAMN04488116_0233 | SAMN04488116_2574 | Putative negative regulator of RcsB-dependent stress response. | Beta-barrel assembly machine subunit BamA. | 0.628 |
SHG20012.1 | SHG99202.1 | SAMN04488116_0233 | SAMN04488116_3140 | Putative negative regulator of RcsB-dependent stress response. | Hypothetical protein. | 0.657 |
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