Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG17450.1 | SHG22053.1 | SAMN04488116_0088 | SAMN04488116_0363 | DinB superfamily protein. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.891 |
SHG17450.1 | SHG22124.1 | SAMN04488116_0088 | SAMN04488116_0367 | DinB superfamily protein. | Acetyltransferase (GNAT) family protein. | 0.552 |
SHG22053.1 | SHG17450.1 | SAMN04488116_0363 | SAMN04488116_0088 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | DinB superfamily protein. | 0.891 |
SHG22053.1 | SHG22124.1 | SAMN04488116_0363 | SAMN04488116_0367 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Acetyltransferase (GNAT) family protein. | 0.840 |
SHG22053.1 | SHG66574.1 | SAMN04488116_0363 | SAMN04488116_2003 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | 0.995 |
SHG22053.1 | SHG83753.1 | SAMN04488116_0363 | SAMN04488116_2624 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Aspartate kinase. | 0.837 |
SHG22053.1 | SHG89873.1 | SAMN04488116_0363 | SAMN04488116_2843 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Predicted ATPase. | 0.553 |
SHG22053.1 | SHH06420.1 | SAMN04488116_0363 | SAMN04488116_3422 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Glutamate synthase (ferredoxin). | 0.980 |
SHG22053.1 | hisI | SAMN04488116_0363 | SAMN04488116_0951 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | phosphoribosyl-ATP pyrophosphatase; In the N-terminal section; belongs to the PRA-CH family. | 0.437 |
SHG22113.1 | SHG22124.1 | SAMN04488116_0366 | SAMN04488116_0367 | Uncharacterized membrane protein YphA, DoxX/SURF4 family. | Acetyltransferase (GNAT) family protein. | 0.574 |
SHG22113.1 | SHG66574.1 | SAMN04488116_0366 | SAMN04488116_2003 | Uncharacterized membrane protein YphA, DoxX/SURF4 family. | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | 0.659 |
SHG22124.1 | SHG17450.1 | SAMN04488116_0367 | SAMN04488116_0088 | Acetyltransferase (GNAT) family protein. | DinB superfamily protein. | 0.552 |
SHG22124.1 | SHG22053.1 | SAMN04488116_0367 | SAMN04488116_0363 | Acetyltransferase (GNAT) family protein. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.840 |
SHG22124.1 | SHG22113.1 | SAMN04488116_0367 | SAMN04488116_0366 | Acetyltransferase (GNAT) family protein. | Uncharacterized membrane protein YphA, DoxX/SURF4 family. | 0.574 |
SHG22124.1 | SHG22494.1 | SAMN04488116_0367 | SAMN04488116_0388 | Acetyltransferase (GNAT) family protein. | DNA-binding transcriptional regulator, MarR family. | 0.685 |
SHG22124.1 | SHG49325.1 | SAMN04488116_0367 | SAMN04488116_1451 | Acetyltransferase (GNAT) family protein. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.494 |
SHG22124.1 | SHG66574.1 | SAMN04488116_0367 | SAMN04488116_2003 | Acetyltransferase (GNAT) family protein. | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | 0.668 |
SHG22124.1 | SHG83753.1 | SAMN04488116_0367 | SAMN04488116_2624 | Acetyltransferase (GNAT) family protein. | Aspartate kinase. | 0.451 |
SHG22124.1 | SHG89873.1 | SAMN04488116_0367 | SAMN04488116_2843 | Acetyltransferase (GNAT) family protein. | Predicted ATPase. | 0.436 |
SHG22124.1 | SHH06420.1 | SAMN04488116_0367 | SAMN04488116_3422 | Acetyltransferase (GNAT) family protein. | Glutamate synthase (ferredoxin). | 0.507 |
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