STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG26849.1Penicillin amidase. (797 aa)    
Predicted Functional Partners:
tilS
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.558
SHG26839.1
Thiol:disulfide interchange protein DsbD.
       0.551
SHG31715.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.516
SHG26777.1
NAD(P)H-dependent FMN reductase.
       0.504
SHG26795.1
Para-aminobenzoate synthetase component 1.
       0.504
SHG27333.1
D-citramalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
     0.455
SHG26869.1
Hypothetical protein.
       0.449
SHG26887.1
TonB-dependent Receptor Plug Domain.
       0.449
SHG26903.1
Protein of unknown function.
       0.449
SHG26923.1
Protein of unknown function.
       0.449
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.