STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG33401.1Carbohydrate family 9 binding domain-like. (738 aa)    
Predicted Functional Partners:
SHG33369.1
ABC-2 type transport system permease protein.
 
    0.914
SHG33385.1
ABC-2 type transport system permease protein.
 
     0.914
SHG33350.1
ABC-2 type transport system ATP-binding protein.
 
     0.869
SHG70514.1
Lantibiotic dehydratase, C terminus.
  
     0.621
SHG99775.1
Hypothetical protein.
  
     0.609
SHG46377.1
Transcriptional regulator, LytTR family.
  
     0.607
SHG70470.1
Lanthionine synthetase C-like protein.
  
     0.606
SHG33419.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.605
SHG33441.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.605
SHG70496.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
  
     0.532
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.