Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SHG34477.1Metallopeptidase family M24. (459 aa)    
Predicted Functional Partners:
SHG18699.1
Amidohydrolase family protein.
  
     0.656
SHG34458.1
CarboxypepD_reg-like domain-containing protein.
       0.584
SHH02862.1
Amidase.
  
 
   0.560
SHG34495.1
O-succinylbenzoic acid--CoA ligase.
     
 0.520
SHG34517.1
Hypothetical protein.
       0.514
SHG27523.1
Intracellular sulfur oxidation protein, DsrE/DsrF family.
  
     0.495
SHG34537.1
O-succinylbenzoate synthase.
       0.488
SHG22053.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.458
SHG34208.1
Protein of unknown function.
  
     0.455
SHG22748.1
Hypothetical protein.
  
     0.433
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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