STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG34477.1Metallopeptidase family M24. (459 aa)    
Predicted Functional Partners:
SHG18699.1
Amidohydrolase family protein.
  
     0.656
SHG34458.1
CarboxypepD_reg-like domain-containing protein.
       0.584
SHG22053.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.579
SHH02862.1
Amidase.
  
 
   0.560
SHG34495.1
O-succinylbenzoic acid--CoA ligase.
       0.522
SHG34517.1
Hypothetical protein.
       0.515
SHG34537.1
O-succinylbenzoate synthase.
       0.497
SHG27523.1
Intracellular sulfur oxidation protein, DsrE/DsrF family.
  
     0.495
pepT
Tripeptide aminopeptidase; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
   
 
 0.469
SHG34208.1
Protein of unknown function.
  
     0.455
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.