Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG19257.1 | SHG26795.1 | SAMN04488116_0189 | SAMN04488116_0658 | Shikimate dehydrogenase. | Para-aminobenzoate synthetase component 1. | 0.643 |
SHG19257.1 | SHG34722.1 | SAMN04488116_0189 | SAMN04488116_1081 | Shikimate dehydrogenase. | Isochorismate synthase. | 0.886 |
SHG19257.1 | SHG84539.1 | SAMN04488116_0189 | SAMN04488116_2656 | Shikimate dehydrogenase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.961 |
SHG19257.1 | SHH00395.1 | SAMN04488116_0189 | SAMN04488116_3195 | Shikimate dehydrogenase. | Anthranilate synthase component 2. | 0.846 |
SHG19257.1 | aroC | SAMN04488116_0189 | SAMN04488116_0733 | Shikimate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.968 |
SHG26795.1 | SHG19257.1 | SAMN04488116_0658 | SAMN04488116_0189 | Para-aminobenzoate synthetase component 1. | Shikimate dehydrogenase. | 0.643 |
SHG26795.1 | SHG34722.1 | SAMN04488116_0658 | SAMN04488116_1081 | Para-aminobenzoate synthetase component 1. | Isochorismate synthase. | 0.826 |
SHG26795.1 | SHG84539.1 | SAMN04488116_0658 | SAMN04488116_2656 | Para-aminobenzoate synthetase component 1. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.861 |
SHG26795.1 | SHH00395.1 | SAMN04488116_0658 | SAMN04488116_3195 | Para-aminobenzoate synthetase component 1. | Anthranilate synthase component 2. | 0.999 |
SHG26795.1 | aroC | SAMN04488116_0658 | SAMN04488116_0733 | Para-aminobenzoate synthetase component 1. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.884 |
SHG26795.1 | trpD | SAMN04488116_0658 | SAMN04488116_3194 | Para-aminobenzoate synthetase component 1. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.997 |
SHG34722.1 | SHG19257.1 | SAMN04488116_1081 | SAMN04488116_0189 | Isochorismate synthase. | Shikimate dehydrogenase. | 0.886 |
SHG34722.1 | SHG26795.1 | SAMN04488116_1081 | SAMN04488116_0658 | Isochorismate synthase. | Para-aminobenzoate synthetase component 1. | 0.826 |
SHG34722.1 | SHG34744.1 | SAMN04488116_1081 | SAMN04488116_1082 | Isochorismate synthase. | Uncharacterized domain 1-containing protein. | 0.882 |
SHG34722.1 | SHG84539.1 | SAMN04488116_1081 | SAMN04488116_2656 | Isochorismate synthase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.946 |
SHG34722.1 | SHG86470.1 | SAMN04488116_1081 | SAMN04488116_2752 | Isochorismate synthase. | Aspartate aminotransferase. | 0.851 |
SHG34722.1 | SHG99435.1 | SAMN04488116_1081 | SAMN04488116_3151 | Isochorismate synthase. | Aspartate aminotransferase. | 0.851 |
SHG34722.1 | SHH00395.1 | SAMN04488116_1081 | SAMN04488116_3195 | Isochorismate synthase. | Anthranilate synthase component 2. | 0.964 |
SHG34722.1 | aroC | SAMN04488116_1081 | SAMN04488116_0733 | Isochorismate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.949 |
SHG34722.1 | menD | SAMN04488116_1081 | SAMN04488116_1080 | Isochorismate synthase. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.990 |
page 1 of 3