STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG45376.1FecR family protein. (380 aa)    
Predicted Functional Partners:
SHG45353.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.883
SHG26241.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.774
SHG91073.1
FecR family protein.
  
  
 
0.747
SHG81596.1
Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.718
SHG90306.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.678
SHG81807.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.648
SHG72446.1
FecR family protein.
  
  
 
0.639
SHG91840.1
FecR family protein.
  
  
 
0.638
SHG43673.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.614
SHG26204.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.609
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.