STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG47563.1Peptidyl-prolyl cis-trans isomerase D. (706 aa)    
Predicted Functional Partners:
SHG47660.1
Hypothetical protein.
 
 
   0.814
SHG47632.1
LPS export ABC transporter protein LptC.
 
     0.747
SHH03132.1
Periplasmic chaperone for outer membrane proteins SurA.
  
     0.734
SHG19880.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
  
 0.733
SHG17391.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
   
 0.689
SHG20012.1
Putative negative regulator of RcsB-dependent stress response.
  
    0.669
SHG56471.1
Intein N-terminal splicing region.
 
     0.645
SHG47676.1
Long-chain fatty acid transport protein.
 
     0.635
SHG51065.1
Hypothetical protein.
  
     0.629
SHG97638.1
Tetratricopeptide repeat-containing protein.
  
     0.619
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.