STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG52962.1Agmatine deiminase; Belongs to the agmatine deiminase family. (377 aa)    
Predicted Functional Partners:
SHG33131.1
Agmatinase; Belongs to the arginase family.
     
 0.859
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.564
SHG52944.1
Iron complex outermembrane recepter protein.
       0.538
SHG52995.1
Conserved hypothetical protein.
       0.505
SHG53018.1
Calcineurin-like phosphoesterase.
       0.505
SHG52918.1
Predicted dehydrogenase.
  
    0.498
SHG53335.1
Carbon-nitrogen hydrolase.
 
 
 0.441
SHG52903.1
Nicotinamidase-related amidase.
  
    0.423
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.