STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG53040.1LytTr DNA-binding domain-containing protein. (270 aa)    
Predicted Functional Partners:
SHG53056.1
Hypothetical protein.
 
     0.805
SHG47897.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.748
SHG74722.1
Two component regulator propeller; Manually curated.
    
  0.706
SHG29993.1
Tetratricopeptide repeat-containing protein.
    
  0.639
SHG16358.1
DNA-binding transcriptional regulator, MarR family.
  
     0.608
SHG48633.1
Acid phosphatase (class A).
  
     0.591
SHH07642.1
Hypothetical protein.
  
     0.567
SHG52995.1
Conserved hypothetical protein.
       0.563
SHG53018.1
Calcineurin-like phosphoesterase.
       0.563
SHG72492.1
Putative zinc-binding metallo-peptidase.
  
     0.520
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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