STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG54098.1Putative membrane protein. (333 aa)    
Predicted Functional Partners:
SHG54115.1
Hypothetical protein.
       0.773
SHH02802.1
Hypothetical protein.
  
     0.620
SHG54076.1
Nitronate monooxygenase.
       0.584
SHG54137.1
Cytochrome c.
       0.509
SHG73756.1
Ion channel.
  
     0.499
SHG31158.1
Protein of unknown function.
  
     0.496
SHG54160.1
Hypothetical protein.
       0.482
SHG54175.1
Hypothetical protein.
       0.482
SHG82990.1
DinB superfamily protein.
  
     0.437
SHG54044.1
acyl-CoA thioester hydrolase.
       0.419
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.