STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG56261.1Hypothetical protein. (49 aa)    
Predicted Functional Partners:
SHG56285.1
Hypothetical protein.
       0.757
SHG56222.1
Hypothetical protein.
       0.741
SHG56240.1
Hypothetical protein.
       0.741
SHG56307.1
AraC-type DNA-binding protein.
       0.507
SHG56329.1
Nitronate monooxygenase.
       0.507
SHG56352.1
Putative lumazine-binding.
       0.507
SHG56368.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.504
SHG56389.1
4-oxalocrotonate tautomerase.
       0.504
SHG56198.1
Uracil-DNA glycosylase.
       0.493
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.