Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG35830.1 | SHG66175.1 | SAMN04488116_1142 | SAMN04488116_1985 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Protein involved in gliding motility SprA. | 0.917 |
SHG35830.1 | SHG78203.1 | SAMN04488116_1142 | SAMN04488116_2517 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Hypothetical protein. | 0.966 |
SHG35830.1 | SHG91970.1 | SAMN04488116_1142 | SAMN04488116_2934 | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | Hypothetical protein. | 0.964 |
SHG46597.1 | SHG46621.1 | SAMN04488116_1334 | SAMN04488116_1335 | Gliding motility associated protien GldN. | Gliding motility-associated protein GldM. | 0.970 |
SHG46597.1 | SHG46641.1 | SAMN04488116_1334 | SAMN04488116_1336 | Gliding motility associated protien GldN. | Gliding motility-associated protein GldL. | 0.933 |
SHG46597.1 | SHG59521.1 | SAMN04488116_1334 | SAMN04488116_1938 | Gliding motility associated protien GldN. | Hypothetical protein. | 0.825 |
SHG46597.1 | SHG66175.1 | SAMN04488116_1334 | SAMN04488116_1985 | Gliding motility associated protien GldN. | Protein involved in gliding motility SprA. | 0.850 |
SHG46597.1 | SHG86356.1 | SAMN04488116_1334 | SAMN04488116_2745 | Gliding motility associated protien GldN. | Probable protein-translocating porin PorT (TC 1.B.44.1.1). | 0.801 |
SHG46597.1 | SHG86632.1 | SAMN04488116_1334 | SAMN04488116_2762 | Gliding motility associated protien GldN. | Protein of unknown function. | 0.738 |
SHG46597.1 | SHH05864.1 | SAMN04488116_1334 | SAMN04488116_3392 | Gliding motility associated protien GldN. | Hypothetical protein. | 0.465 |
SHG46621.1 | SHG46597.1 | SAMN04488116_1335 | SAMN04488116_1334 | Gliding motility-associated protein GldM. | Gliding motility associated protien GldN. | 0.970 |
SHG46621.1 | SHG46641.1 | SAMN04488116_1335 | SAMN04488116_1336 | Gliding motility-associated protein GldM. | Gliding motility-associated protein GldL. | 0.999 |
SHG46621.1 | SHG59521.1 | SAMN04488116_1335 | SAMN04488116_1938 | Gliding motility-associated protein GldM. | Hypothetical protein. | 0.869 |
SHG46621.1 | SHG66175.1 | SAMN04488116_1335 | SAMN04488116_1985 | Gliding motility-associated protein GldM. | Protein involved in gliding motility SprA. | 0.859 |
SHG46621.1 | SHG86356.1 | SAMN04488116_1335 | SAMN04488116_2745 | Gliding motility-associated protein GldM. | Probable protein-translocating porin PorT (TC 1.B.44.1.1). | 0.815 |
SHG46621.1 | SHG86632.1 | SAMN04488116_1335 | SAMN04488116_2762 | Gliding motility-associated protein GldM. | Protein of unknown function. | 0.742 |
SHG46621.1 | SHH05864.1 | SAMN04488116_1335 | SAMN04488116_3392 | Gliding motility-associated protein GldM. | Hypothetical protein. | 0.545 |
SHG46641.1 | SHG46597.1 | SAMN04488116_1336 | SAMN04488116_1334 | Gliding motility-associated protein GldL. | Gliding motility associated protien GldN. | 0.933 |
SHG46641.1 | SHG46621.1 | SAMN04488116_1336 | SAMN04488116_1335 | Gliding motility-associated protein GldL. | Gliding motility-associated protein GldM. | 0.999 |
SHG46641.1 | SHG59521.1 | SAMN04488116_1336 | SAMN04488116_1938 | Gliding motility-associated protein GldL. | Hypothetical protein. | 0.836 |
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