Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG22053.1 | SHG66574.1 | SAMN04488116_0363 | SAMN04488116_2003 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | 0.995 |
SHG22053.1 | SHG69884.1 | SAMN04488116_0363 | SAMN04488116_2153 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Kynurenine formamidase. | 0.872 |
SHG22053.1 | SHG69904.1 | SAMN04488116_0363 | SAMN04488116_2154 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.446 |
SHG53646.1 | SHG69884.1 | SAMN04488116_1656 | SAMN04488116_2153 | Tryptophan 2,3-dioxygenase. | Kynurenine formamidase. | 0.975 |
SHG53646.1 | kmo | SAMN04488116_1656 | SAMN04488116_1308 | Tryptophan 2,3-dioxygenase. | Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily. | 0.732 |
SHG53646.1 | kynU | SAMN04488116_1656 | SAMN04488116_1309 | Tryptophan 2,3-dioxygenase. | Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. | 0.984 |
SHG66574.1 | SHG22053.1 | SAMN04488116_2003 | SAMN04488116_0363 | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.995 |
SHG66574.1 | SHG69884.1 | SAMN04488116_2003 | SAMN04488116_2153 | Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor. | Kynurenine formamidase. | 0.802 |
SHG69825.1 | SHG69868.1 | SAMN04488116_2150 | SAMN04488116_2152 | Predicted DNA-binding protein, MmcQ/YjbR family. | Protein of unknown function. | 0.803 |
SHG69825.1 | SHG69884.1 | SAMN04488116_2150 | SAMN04488116_2153 | Predicted DNA-binding protein, MmcQ/YjbR family. | Kynurenine formamidase. | 0.722 |
SHG69825.1 | SHG69904.1 | SAMN04488116_2150 | SAMN04488116_2154 | Predicted DNA-binding protein, MmcQ/YjbR family. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.721 |
SHG69825.1 | SHG69947.1 | SAMN04488116_2150 | SAMN04488116_2156 | Predicted DNA-binding protein, MmcQ/YjbR family. | Hypothetical protein. | 0.631 |
SHG69825.1 | ruvC | SAMN04488116_2150 | SAMN04488116_2155 | Predicted DNA-binding protein, MmcQ/YjbR family. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.670 |
SHG69868.1 | SHG69825.1 | SAMN04488116_2152 | SAMN04488116_2150 | Protein of unknown function. | Predicted DNA-binding protein, MmcQ/YjbR family. | 0.803 |
SHG69868.1 | SHG69884.1 | SAMN04488116_2152 | SAMN04488116_2153 | Protein of unknown function. | Kynurenine formamidase. | 0.724 |
SHG69868.1 | SHG69904.1 | SAMN04488116_2152 | SAMN04488116_2154 | Protein of unknown function. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.722 |
SHG69868.1 | SHG69947.1 | SAMN04488116_2152 | SAMN04488116_2156 | Protein of unknown function. | Hypothetical protein. | 0.631 |
SHG69868.1 | ruvC | SAMN04488116_2152 | SAMN04488116_2155 | Protein of unknown function. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.664 |
SHG69884.1 | SHG22053.1 | SAMN04488116_2153 | SAMN04488116_0363 | Kynurenine formamidase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.872 |
SHG69884.1 | SHG53646.1 | SAMN04488116_2153 | SAMN04488116_1656 | Kynurenine formamidase. | Tryptophan 2,3-dioxygenase. | 0.975 |
page 1 of 3