STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG73261.1Outer membrane receptor proteins, mostly Fe transport. (889 aa)    
Predicted Functional Partners:
SHG73245.1
Trehalase.
 
     0.894
SHG73200.1
Transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.886
SHG73285.1
Transcriptional regulator, LacI family.
 
     0.830
SHG73180.1
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
     0.640
SHG49006.1
Hypothetical protein.
  
     0.603
SHG73217.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.549
SHG47897.1
Glyoxylase, beta-lactamase superfamily II.
  
    0.547
SHH07642.1
Hypothetical protein.
  
 
   0.544
SHG73329.1
Hypothetical protein.
 
     0.464
SHG45416.1
Alpha-galactosidase.
  
     0.453
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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