STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG75130.1Iron complex outermembrane recepter protein. (783 aa)    
Predicted Functional Partners:
SHG56129.1
Amidohydrolase family protein.
  
     0.666
SHG75151.1
Hypothetical protein.
       0.539
SHG75077.1
N-methylhydantoinase B.
      0.512
SHG75104.1
N-methylhydantoinase A.
       0.512
SHG21041.1
FecR family protein.
  
    0.491
SHG74952.1
N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit.
       0.475
SHG74974.1
Hypothetical protein.
       0.475
SHG74998.1
Cytosine permease.
       0.475
SHG75027.1
Hypothetical protein.
       0.475
SHG75052.1
Allantoin racemase.
       0.475
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.