STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG76694.1Sugar phosphate isomerase/epimerase. (327 aa)    
Predicted Functional Partners:
SHG76595.1
Predicted dehydrogenase.
 
    0.826
SHG76647.1
Nucleoside transporter.
 
    0.799
SHG76620.1
Fucose permease.
 
     0.767
SHG76743.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.766
SHG76673.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
       0.722
SHG76724.1
Choline dehydrogenase.
 
     0.619
SHH09437.1
Xylulokinase.
  
 
 0.619
SHG45150.1
Predicted dehydrogenase.
  
    0.542
SHG76495.1
Protein of unknown function.
 
     0.542
SHG77137.1
Oxidoreductase family, C-terminal alpha/beta domain.
  
    0.518
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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