STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG81640.1TonB-linked outer membrane protein, SusC/RagA family. (1155 aa)    
Predicted Functional Partners:
SHG81656.1
Starch-binding associating with outer membrane.
 
   0.952
SHG91119.1
Starch-binding associating with outer membrane.
 
 
   0.791
SHG90379.1
Starch-binding associating with outer membrane.
  
 
   0.773
SHG26188.1
Starch-binding associating with outer membrane; Manually curated.
 
 
   0.767
SHG70963.1
Starch-binding associating with outer membrane.
  
 
   0.703
SHG81617.1
FecR family protein.
 
     0.656
SHG81871.1
Starch-binding associating with outer membrane.
 
 
   0.613
SHG21069.1
Susd and RagB outer membrane lipoprotein.
  
 
   0.576
SHG29329.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.549
SHG81596.1
Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.540
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.