STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG84099.1Lipid A 3-O-deacylase (PagL). (368 aa)    
Predicted Functional Partners:
SHG84128.1
Putative auto-transporter adhesin, head GIN domain.
 
     0.949
SHG97408.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
     0.740
SHG32761.1
Hypothetical protein.
  
     0.674
SHG44533.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
  
  
 0.672
SHG97577.1
Hypothetical protein.
  
     0.671
SHG31994.1
Hypothetical protein.
  
  
 0.654
SHG27460.1
Hypothetical protein.
  
     0.646
SHH05586.1
Hypothetical protein.
  
     0.640
SHG17283.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
  
 
 0.620
SHG22015.1
PAS domain S-box-containing protein.
  
 
 0.620
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.