STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG91004.1Putative isomerase. (674 aa)    
Predicted Functional Partners:
SHG90983.1
Hydroxylysine kinase/5-phosphonooxy-L-lysine phospho-lyase apoenzyme.
 
    0.912
SHG90954.1
Beta-galactosidase.
     0.903
SHG22764.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
 
 0.762
SHG91025.1
Hypothetical protein.
       0.568
SHG30623.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.505
SHH03579.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
     
  0.499
SHG49789.1
Glycosidase.
  
 
 0.461
SHG82727.1
Glycogen recognition site of AMP-activated protein kinase.
  
 
 0.461
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.461
SHH05728.1
Hypothetical protein.
  
     0.443
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.