STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG95394.1Thiol-activated cytolysin. (656 aa)    
Predicted Functional Partners:
SHG31994.1
Hypothetical protein.
    
 0.809
SHG22069.1
Signal transduction histidine kinase.
    
 0.769
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.761
SHG74722.1
Two component regulator propeller; Manually curated.
    
 0.757
SHG15901.1
LruC domain-containing protein.
  
    0.755
SHG29993.1
Tetratricopeptide repeat-containing protein.
    
 0.735
SHG69559.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
   0.698
SHG69537.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.689
SHG82825.1
HAMP domain-containing protein.
 
 
 
 0.678
SHG95422.1
Tetratricopeptide repeat-containing protein.
 
    0.674
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.