Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG22069.1 | SHG26358.1 | SAMN04488116_0364 | SAMN04488116_0635 | Signal transduction histidine kinase. | Hypothetical protein. | 0.410 |
SHG22069.1 | SHG31994.1 | SAMN04488116_0364 | SAMN04488116_0937 | Signal transduction histidine kinase. | Hypothetical protein. | 0.999 |
SHG22069.1 | SHG89873.1 | SAMN04488116_0364 | SAMN04488116_2843 | Signal transduction histidine kinase. | Predicted ATPase. | 0.999 |
SHG22069.1 | SHG95327.1 | SAMN04488116_0364 | SAMN04488116_3005 | Signal transduction histidine kinase. | Ankyrin repeat. | 0.515 |
SHG22069.1 | SHG95422.1 | SAMN04488116_0364 | SAMN04488116_3009 | Signal transduction histidine kinase. | Tetratricopeptide repeat-containing protein. | 0.724 |
SHG22069.1 | SHH02444.1 | SAMN04488116_0364 | SAMN04488116_3255 | Signal transduction histidine kinase. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.916 |
SHG22069.1 | adk | SAMN04488116_0364 | SAMN04488116_3367 | Signal transduction histidine kinase. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.867 |
SHG22069.1 | dnaK | SAMN04488116_0364 | SAMN04488116_0607 | Signal transduction histidine kinase. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.509 |
SHG26358.1 | SHG22069.1 | SAMN04488116_0635 | SAMN04488116_0364 | Hypothetical protein. | Signal transduction histidine kinase. | 0.410 |
SHG26358.1 | SHG95327.1 | SAMN04488116_0635 | SAMN04488116_3005 | Hypothetical protein. | Ankyrin repeat. | 0.782 |
SHG26358.1 | SHG95422.1 | SAMN04488116_0635 | SAMN04488116_3009 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.786 |
SHG26358.1 | alaS | SAMN04488116_0635 | SAMN04488116_1250 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.976 |
SHG26358.1 | rpoA | SAMN04488116_0635 | SAMN04488116_2949 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.879 |
SHG31994.1 | SHG22069.1 | SAMN04488116_0937 | SAMN04488116_0364 | Hypothetical protein. | Signal transduction histidine kinase. | 0.999 |
SHG31994.1 | SHG89873.1 | SAMN04488116_0937 | SAMN04488116_2843 | Hypothetical protein. | Predicted ATPase. | 0.997 |
SHG31994.1 | SHG95422.1 | SAMN04488116_0937 | SAMN04488116_3009 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.704 |
SHG31994.1 | SHH02444.1 | SAMN04488116_0937 | SAMN04488116_3255 | Hypothetical protein. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.519 |
SHG31994.1 | adk | SAMN04488116_0937 | SAMN04488116_3367 | Hypothetical protein. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.609 |
SHG31994.1 | dnaK | SAMN04488116_0937 | SAMN04488116_0607 | Hypothetical protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.513 |
SHG89873.1 | SHG22069.1 | SAMN04488116_2843 | SAMN04488116_0364 | Predicted ATPase. | Signal transduction histidine kinase. | 0.999 |
page 1 of 4