STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG96098.1RNA polymerase sigma-70 factor, ECF subfamily. (164 aa)    
Predicted Functional Partners:
SHG96073.1
Hypothetical protein.
 
     0.861
SHG84768.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.688
SHG33919.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.676
SHG95151.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.674
SHH08042.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.642
SHG99327.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.613
SHG96121.1
Aminobenzoyl-glutamate utilization protein B.
  
    0.576
SHG67289.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.521
SHG43673.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.520
SHG91808.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.450
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.