STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG98176.1TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; Partial gene; manually curated. (258 aa)    
Predicted Functional Partners:
SHH10876.1
TonB dependent receptor; Partial gene; manually curated.
 
     0.976
SHH10951.1
TonB dependent receptor; Partial gene; manually curated.
 
     0.976
SHH06154.1
Starch-binding associating with outer membrane.
  
 
   0.847
SHG21069.1
Susd and RagB outer membrane lipoprotein.
 
 
   0.571
SHG81871.1
Starch-binding associating with outer membrane.
  
 
   0.549
SHG26188.1
Starch-binding associating with outer membrane; Manually curated.
 
 
   0.518
SHG83531.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.500
SHG82559.1
Beta-barrel assembly machine subunit BamA.
  
     0.486
SHG84413.1
Protein of unknown function; Manually curated.
  
     0.482
SHG66103.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.475
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.