STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG99373.1Anti-sigma-K factor rskA. (252 aa)    
Predicted Functional Partners:
SHG99393.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.950
SHG99327.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   0.708
SHG51555.1
Hypothetical protein.
  
     0.693
SHG78356.1
Protein of unknown function.
  
     0.671
SHG22147.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.670
SHG31517.1
Von Willebrand factor type A domain-containing protein.
  
     0.668
SHG58192.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.665
SHH08032.1
Hypothetical protein.
  
     0.657
SHG76112.1
Hypothetical protein.
  
     0.636
SHG58222.1
C-terminal domain of CHU protein family protein.
  
     0.626
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.