Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG22053.1 | SHG24437.1 | SAMN04488116_0363 | SAMN04488116_0511 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. | 0.996 |
SHG22053.1 | SHG53335.1 | SAMN04488116_0363 | SAMN04488116_1641 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Carbon-nitrogen hydrolase. | 0.861 |
SHG22053.1 | SHG83753.1 | SAMN04488116_0363 | SAMN04488116_2624 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Aspartate kinase. | 0.837 |
SHG22053.1 | SHG97511.1 | SAMN04488116_0363 | SAMN04488116_3103 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Aspartate kinase. | 0.837 |
SHG22053.1 | SHG99435.1 | SAMN04488116_0363 | SAMN04488116_3151 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Aspartate aminotransferase. | 0.916 |
SHG22053.1 | SHH06420.1 | SAMN04488116_0363 | SAMN04488116_3422 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Glutamate synthase (ferredoxin). | 0.980 |
SHG22053.1 | mdh | SAMN04488116_0363 | SAMN04488116_2799 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.997 |
SHG24437.1 | SHG22053.1 | SAMN04488116_0511 | SAMN04488116_0363 | Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.996 |
SHG24437.1 | SHG99435.1 | SAMN04488116_0511 | SAMN04488116_3151 | Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. | Aspartate aminotransferase. | 0.915 |
SHG24437.1 | SHH06420.1 | SAMN04488116_0511 | SAMN04488116_3422 | Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. | Glutamate synthase (ferredoxin). | 0.919 |
SHG24437.1 | mdh | SAMN04488116_0511 | SAMN04488116_2799 | Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.935 |
SHG49325.1 | SHG72265.1 | SAMN04488116_1451 | SAMN04488116_2259 | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Aspartate kinase; Belongs to the aspartokinase family. | 0.869 |
SHG49325.1 | SHG83753.1 | SAMN04488116_1451 | SAMN04488116_2624 | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Aspartate kinase. | 0.953 |
SHG49325.1 | SHG97511.1 | SAMN04488116_1451 | SAMN04488116_3103 | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Aspartate kinase. | 0.912 |
SHG49325.1 | SHG99435.1 | SAMN04488116_1451 | SAMN04488116_3151 | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Aspartate aminotransferase. | 0.873 |
SHG49325.1 | SHH06420.1 | SAMN04488116_1451 | SAMN04488116_3422 | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Glutamate synthase (ferredoxin). | 0.943 |
SHG53335.1 | SHG22053.1 | SAMN04488116_1641 | SAMN04488116_0363 | Carbon-nitrogen hydrolase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.861 |
SHG53335.1 | SHG99435.1 | SAMN04488116_1641 | SAMN04488116_3151 | Carbon-nitrogen hydrolase. | Aspartate aminotransferase. | 0.876 |
SHG53335.1 | SHH06420.1 | SAMN04488116_1641 | SAMN04488116_3422 | Carbon-nitrogen hydrolase. | Glutamate synthase (ferredoxin). | 0.869 |
SHG53335.1 | mdh | SAMN04488116_1641 | SAMN04488116_2799 | Carbon-nitrogen hydrolase. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.857 |
page 1 of 4