STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SHH00670.1DNA uptake protein ComE. (282 aa)    
Predicted Functional Partners:
SHH00583.1
Protein of unknown function.
 
     0.824
SHG47440.1
Competence protein ComEC.
 
  
 0.775
SHH00686.1
Acyl-CoA dehydrogenase.
       0.743
SHH00648.1
Alanine or glycine:cation symporter, AGCS family.
       0.730
SHH08170.1
DNA processing protein.
 
  
 0.695
SHG50536.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.694
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.623
SHG91534.1
Hypothetical protein.
  
     0.608
SHG34040.1
Protein of unknown function.
  
     0.602
SHG53289.1
comF family protein.
 
  
 0.595
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.