STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH03238.1Beta-carotene 3-hydroxylase. (149 aa)    
Predicted Functional Partners:
SHH03253.1
Phytoene/squalene synthetase.
 
 0.983
SHH03275.1
Phytoene desaturase.
 
   
 0.966
SHG75823.1
Lycopene beta-cyclase.
 
  
 0.899
SHH03300.1
B12 binding domain-containing protein.
 
     0.856
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 0.655
SHG86489.1
linoleoyl-CoA desaturase.
 
 
 0.569
SHG26502.1
Lipopolysaccharide export system permease protein.
  
     0.466
SHG16522.1
Hypothetical protein.
   
   0.457
SHH09620.1
Protein of unknown function.
   
   0.457
SHG35124.1
Ligand-binding SRPBCC domain-containing protein.
 
     0.402
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.