STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH03275.1Phytoene desaturase. (484 aa)    
Predicted Functional Partners:
SHH03253.1
Phytoene/squalene synthetase.
 
 0.999
SHH03238.1
Beta-carotene 3-hydroxylase.
 
   
 0.966
SHG75823.1
Lycopene beta-cyclase.
 
 
 0.941
SHH03300.1
B12 binding domain-containing protein.
 
  
 0.900
SHG35141.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
 0.680
SHG32241.1
Magnesium chelatase subunit I.
  
 
 0.557
SHG49572.1
4-hydroxybenzoate polyprenyltransferase.
  
 
 0.548
SHG86489.1
linoleoyl-CoA desaturase.
    
 0.525
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
 
 0.511
SHG91951.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
   
 0.504
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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