STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH03429.1Cupin domain-containing protein. (98 aa)    
Predicted Functional Partners:
SHH03373.1
Cu-processing system permease protein.
       0.773
SHH03393.1
Cu-processing system ATP-binding protein.
       0.773
SHH03421.1
Nitrous oxidase accessory protein.
       0.773
SHH03455.1
Copper chaperone NosL.
       0.773
SHH03462.1
Hypothetical protein.
       0.768
SHH03334.1
Gluconate 2-dehydrogenase subunit 3.
    
  0.575
SHH03494.1
Nitrous oxide reductase apoprotein.
       0.556
SHH03357.1
Choline dehydrogenase.
       0.512
SHH03519.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
       0.486
SHH03538.1
Cytochrome c, mono-and diheme variants.
       0.486
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.