STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH07857.13-oxoacid CoA-transferase subunit B. (217 aa)    
Predicted Functional Partners:
SHH07881.1
3-oxoacid CoA-transferase subunit A.
 0.999
SHG22858.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.940
SHG22839.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.902
SHG97677.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.898
SHG17750.1
hydroxymethylglutaryl-CoA lyase.
  
 
 0.886
SHG25121.1
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.882
SHG66217.1
Allosteric NADP-dependent malic enzyme.
  
 
 0.608
SHG27072.1
Uncharacterized conserved protein, DUF849 family.
 
  
  0.556
SHG27683.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
  
 
 0.527
SHG29041.1
2-oxoisovalerate dehydrogenase E1 component.
  
 
 0.527
Your Current Organism:
Flagellimonas flava
NCBI taxonomy Id: 570519
Other names: DSM 22638, F. flava, Flavobacteriaceae bacterium A11, KCTC 22665, Spongiibacterium flavum, Spongiibacterium flavum Yoon et al. 2012, strain A11
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