STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI44006.1WD40-like Beta Propeller Repeat. (578 aa)    
Predicted Functional Partners:
SHI43981.1
WD40-like Beta Propeller Repeat.
 
    
0.831
SHJ27430.1
Por secretion system C-terminal sorting domain-containing protein.
 
 
   0.769
SHJ28450.1
Hypothetical protein.
  
    0.540
SHI48342.1
WD40-like Beta Propeller Repeat.
  
     0.525
SHI76773.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
     0.522
SHJ52451.1
WD40-like Beta Propeller Repeat.
  
   0.480
SHI43933.1
Two component transcriptional regulator, LytTR family.
       0.478
SHI43960.1
Histidine kinase.
       0.478
SHI95185.1
Type IX secretion system membrane protein, PorP/SprF family.
 
   0.455
SHJ33301.1
Cytochrome oxidase complex assembly protein 1.
  
     0.428
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.