STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI62967.1RNA polymerase sigma-70 factor, ECF subfamily. (164 aa)    
Predicted Functional Partners:
SHI62944.1
M penetrans paralogue family 26.
 
     0.870
SHJ64514.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.746
SHJ08091.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.739
SHJ27949.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.739
SHJ55312.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.727
SHI47803.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.719
SHJ63806.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.717
SHI50123.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.703
SHI78393.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.685
SHI60363.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.682
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.