STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI66115.1Type I secretion C-terminal target domain (VC_A0849 subclass). (207 aa)    
Predicted Functional Partners:
SHI66085.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.747
SHI66039.1
Hypothetical protein.
 
     0.736
SHJ32102.1
uroporphyrinogen-III synthase.
  
     0.692
SHI98312.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.638
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.610
SHJ52836.1
Hypothetical protein.
  
     0.589
SHI91833.1
Protein involved in gliding motility GldH.
  
     0.582
SHI65989.1
Chromosome partitioning protein.
       0.563
SHI66315.1
Tetratricopeptide repeat-containing protein.
  
     0.563
SHI66017.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
       0.561
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.