STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI68371.1Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains. (578 aa)    
Predicted Functional Partners:
SHJ49617.1
Helix-turn-helix domain-containing protein.
  
     0.732
SHJ20328.1
AraC-type DNA-binding protein.
  
     0.671
SHJ46645.1
Transcriptional regulator, AraC family.
  
     0.609
SHI65121.1
AraC-type DNA-binding protein.
  
     0.601
SHJ09427.1
Helix-turn-helix domain-containing protein.
  
     0.551
SHI30331.1
AraC-type DNA-binding protein.
  
     0.525
SHJ64352.1
Transcriptional regulator, AraC family.
  
     0.505
SHI68342.1
Hypothetical protein.
       0.497
SHJ28962.1
Iron complex outermembrane recepter protein.
  
     0.489
SHJ33301.1
Cytochrome oxidase complex assembly protein 1.
  
     0.469
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.