STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI59149.1Protein of unknown function. (400 aa)    
Predicted Functional Partners:
SHI59121.1
Hypothetical protein.
 
     0.945
SHI59173.1
TonB-dependent Receptor Plug Domain.
 
     0.945
SHJ06581.1
Hypothetical protein.
 
     0.777
SHJ06607.1
Outer membrane receptor for ferrienterochelin and colicins.
 
     0.775
SHJ06724.1
Hypothetical protein.
 
     0.775
SHI59202.1
Hypothetical protein.
       0.770
SHI71329.1
Hypothetical protein.
  
     0.474
SHI32015.1
Starch-binding associating with outer membrane.
  
     0.465
SHJ56612.1
Hypothetical protein.
  
     0.435
SHJ24339.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.