STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI86618.1Aldo/keto reductase. (278 aa)    
Predicted Functional Partners:
SHI31277.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
   
 0.847
trpA
Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
    
  0.815
SHI94481.1
Polar amino acid transport system substrate-binding protein.
  
 
 0.795
SHI79032.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 0.788
SHI86642.1
Cyclic nucleotide-binding domain-containing protein.
  
    0.777
SHI86597.1
Thioredoxin reductase (NADPH).
     
 0.703
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
     
 0.698
SHJ16525.1
Monoamine oxidase.
     
 0.677
SHJ40008.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
     
 0.677
SHJ50146.1
Predicted oxidoreductase.
 
0.674
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.