STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ07716.1Short chain amide porin. (410 aa)    
Predicted Functional Partners:
SHJ07695.1
Homeodomain-like domain-containing protein.
 
     0.893
SHJ07778.1
Na+/proline symporter.
 
     0.857
SHJ07734.1
Putative solute:sodium symporter small subunit.
       0.769
SHJ07796.1
Response regulator receiver domain-containing protein.
 
     0.711
SHJ07758.1
Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.680
SHJ36765.1
Uncharacterized membrane-anchored protein.
  
     0.514
SHJ36776.1
Uncharacterized membrane protein.
  
     0.467
SHJ41234.1
Cysteine-rich CPXCG.
  
     0.435
SHJ47265.1
Peptide chain release factor.
 
    0.418
SHJ28415.1
AsmA-like C-terminal region.
  
     0.401
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.