STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ08793.1Hypothetical protein. (143 aa)    
Predicted Functional Partners:
SHJ54448.1
Hypothetical protein.
  
     0.641
SHI93592.1
Tetratricopeptide repeat-containing protein.
  
     0.585
SHJ10501.1
Hypothetical protein.
  
     0.566
SHJ55682.1
Hypothetical protein.
  
     0.522
SHJ61817.1
Surface antigen variable number repeat-containing protein.
  
     0.520
SHI47992.1
Hypothetical protein.
  
     0.510
SHJ21841.1
Hypothetical protein.
  
     0.506
SHJ61836.1
Surface antigen variable number repeat-containing protein.
  
     0.480
SHI33284.1
4-hydroxybenzoate polyprenyltransferase.
  
     0.473
SHI42762.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.