STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ11986.1Nitroreductase. (223 aa)    
Predicted Functional Partners:
SHJ11960.1
Hypothetical protein.
       0.574
SHJ30588.1
Adenylyltransferase and sulfurtransferase.
    
  0.538
SHJ10753.1
Hypothetical protein.
 
     0.480
SHI43792.1
ABC-type multidrug transport system, permease component.
  
    0.467
SHJ30209.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.450
SHJ11948.1
Formate/nitrite transporter FocA, FNT family.
       0.440
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 
 0.420
SHJ12028.1
Protease I.
       0.405
SHJ11917.1
Putative sigma-54 modulation protein.
  
    0.400
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.