STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ19149.1ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain. (555 aa)    
Predicted Functional Partners:
SHJ19168.1
Multidrug resistance efflux pump.
 0.987
SHJ19187.1
Outer membrane protein TolC.
 
 
  0.969
SHJ19128.1
Transcriptional regulator, TetR family.
 
     0.956
SHI68598.1
ATP-binding cassette, subfamily B.
   
 
0.728
SHI58637.1
ATP-binding cassette, subfamily B, MsbA.
   
 
0.728
SHI80506.1
ABC-type multidrug transport system, ATPase and permease component.
  
 
0.728
SHJ05389.1
ATP-binding cassette, subfamily B, MsbA.
   
 
0.728
SHJ18909.1
ATP-binding cassette, subfamily B, MsbA.
   
 
0.728
SHI81573.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.701
SHJ05689.1
Multidrug resistance efflux pump.
  
 0.701
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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