STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ17831.1Starch-binding associating with outer membrane. (573 aa)    
Predicted Functional Partners:
SHJ17844.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
 
 0.981
SHJ17810.1
Hypothetical protein.
   
   0.757
SHI65648.1
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain.
  
 
 0.650
SHI66017.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.650
SHI84808.1
Aminobenzoyl-glutamate utilization protein B.
  
     0.632
SHJ53668.1
Amidohydrolase family protein.
  
     0.629
SHJ17800.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.625
SHJ23004.1
Hypothetical protein.
  
     0.516
SHI86663.1
Conserved repeat domain-containing protein.
  
 
   0.515
SHI57864.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.471
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.