STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ39457.1Putative phosphoesterase. (212 aa)    
Predicted Functional Partners:
SHJ39475.1
ATP-dependent helicase Lhr and Lhr-like helicase.
 
    0.952
SHJ39498.1
DNA ligase-1.
 
   
 0.948
SHJ39517.1
Putative mRNA 3-end processing factor.
 
     0.945
SHJ39538.1
Hypothetical protein.
       0.619
SHJ39555.1
Lysophospholipase L1.
       0.619
SHJ39580.1
Hypothetical protein.
       0.602
folE-3
GTP cyclohydrolase I.
       0.538
SHJ39411.1
Deoxyribodipyrimidine photolyase-related protein.
 
     0.504
SHJ39387.1
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome); Belongs to the DNA photolyase family.
       0.454
SHJ39426.1
Deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific); Belongs to the DNA photolyase family.
       0.454
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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