STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ40764.1Bacteroides conjugation system ATPase, TraG family. (782 aa)    
Predicted Functional Partners:
SHJ40785.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.942
SHJ40700.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
  
 0.911
SHJ40968.1
Bacteroides conjugative transposon TraK protein.
 
  
 0.881
SHJ30019.1
Hypothetical protein.
 
  
 0.840
SHJ29748.1
TraM recognition site of TraD and TraG.
 
  
 0.803
SHJ29834.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.786
SHJ40747.1
Protein of unknown function.
       0.780
SHJ40805.1
Hypothetical protein.
       0.741
SHJ40828.1
Hypothetical protein.
       0.681
SHJ40720.1
Peptidase family M23.
       0.679
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.