STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ50219.1SMP-30/Gluconolaconase/LRE-like region-containing protein. (305 aa)    
Predicted Functional Partners:
SHJ06424.1
Peptidase family S41.
  
   0.536
SHI59276.1
Lysophospholipase L1.
  
 
   0.534
SHJ50239.1
Alpha/beta hydrolase fold.
       0.519
SHJ59524.1
Hypothetical protein.
  
   0.516
SHI44379.1
Repeat domain-containing protein.
  
     0.486
SHJ50192.1
CAAX protease self-immunity.
       0.486
SHI76369.1
Outer membrane receptor for ferrienterochelin and colicins.
  
 
   0.470
SHJ50171.1
Transcriptional regulator, AraC family.
       0.464
SHI41157.1
N-terminal domain of Peptidase_S41.
  
   0.457
SHI79459.1
Aspartyl protease.
  
   0.456
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.