SHJ55682.1 protein (Aquimarina spongiae) - STRING interaction network

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

SHJ55682.1

Hypothetical protein. (300 aa)

Predicted Functional Partners:

SHJ55664.1

0.774

SHJ55708.1

0.729

SHI95603.1

0.680

SHJ55733.1

0.678

SHJ55698.1

0.672

SHI63838.1

0.669

SHI42195.1

0.661

SHI83712.1

0.633

SHJ33691.1

0.583

SHJ59034.1

0.564

Your Current Organism:

Aquimarina spongiae

NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHI42195.1	SHI63838.1	SAMN04488508_101567	SAMN04488508_102253	Hypothetical protein.	Putative auto-transporter adhesin, head GIN domain.	0.475
SHI42195.1	SHJ55682.1	SAMN04488508_101567	SAMN04488508_110152	Hypothetical protein.	Hypothetical protein.	0.661
SHI63838.1	SHI42195.1	SAMN04488508_102253	SAMN04488508_101567	Putative auto-transporter adhesin, head GIN domain.	Hypothetical protein.	0.475
SHI63838.1	SHI95603.1	SAMN04488508_102253	SAMN04488508_104222	Putative auto-transporter adhesin, head GIN domain.	Hypothetical protein.	0.486
SHI63838.1	SHJ33691.1	SAMN04488508_102253	SAMN04488508_107357	Putative auto-transporter adhesin, head GIN domain.	Protein of unknown function.	0.487
SHI63838.1	SHJ55682.1	SAMN04488508_102253	SAMN04488508_110152	Putative auto-transporter adhesin, head GIN domain.	Hypothetical protein.	0.669
SHI83712.1	SHI95603.1	SAMN04488508_103365	SAMN04488508_104222	Hypothetical protein.	Hypothetical protein.	0.531
SHI83712.1	SHJ33691.1	SAMN04488508_103365	SAMN04488508_107357	Hypothetical protein.	Protein of unknown function.	0.611
SHI83712.1	SHJ55682.1	SAMN04488508_103365	SAMN04488508_110152	Hypothetical protein.	Hypothetical protein.	0.633
SHI83712.1	SHJ59034.1	SAMN04488508_103365	SAMN04488508_11150	Hypothetical protein.	Hypothetical protein.	0.701
SHI95603.1	SHI63838.1	SAMN04488508_104222	SAMN04488508_102253	Hypothetical protein.	Putative auto-transporter adhesin, head GIN domain.	0.486
SHI95603.1	SHI83712.1	SAMN04488508_104222	SAMN04488508_103365	Hypothetical protein.	Hypothetical protein.	0.531
SHI95603.1	SHJ55682.1	SAMN04488508_104222	SAMN04488508_110152	Hypothetical protein.	Hypothetical protein.	0.680
SHI95603.1	SHJ59034.1	SAMN04488508_104222	SAMN04488508_11150	Hypothetical protein.	Hypothetical protein.	0.728
SHJ33691.1	SHI63838.1	SAMN04488508_107357	SAMN04488508_102253	Protein of unknown function.	Putative auto-transporter adhesin, head GIN domain.	0.487
SHJ33691.1	SHI83712.1	SAMN04488508_107357	SAMN04488508_103365	Protein of unknown function.	Hypothetical protein.	0.611
SHJ33691.1	SHJ55682.1	SAMN04488508_107357	SAMN04488508_110152	Protein of unknown function.	Hypothetical protein.	0.583
SHJ55664.1	SHJ55682.1	SAMN04488508_110151	SAMN04488508_110152	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.	Hypothetical protein.	0.774
SHJ55664.1	SHJ55698.1	SAMN04488508_110151	SAMN04488508_110153	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.	Mechanosensitive ion channel.	0.653
SHJ55664.1	SHJ55708.1	SAMN04488508_110151	SAMN04488508_110154	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.	ABC-2 type transport system permease protein.	0.656

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Network Stats

number of nodes:

11

number of edges:

42

average node degree:

7.64

avg. local clustering coefficient:

0.803

expected number of edges:

11

PPI enrichment p-value:

3.1e-12

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005976

Polysaccharide metabolic process

8 of 71

1.73

3.34

4.03e-10

GO:0000271

Polysaccharide biosynthetic process

6 of 65

1.65

2.35

7.59e-07

GO:0016051

Carbohydrate biosynthetic process

7 of 97

1.54

2.32

1.40e-07

GO:0033692

Cellular polysaccharide biosynthetic process

5 of 47

1.71

2.12

9.80e-06

GO:0005975

Carbohydrate metabolic process

9 of 237

1.26

1.78

3.28e-08

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008767

UDP-galactopyranose mutase activity

2 of 2

2.68

0.93

0.0210

GO:0016740

Transferase activity

8 of 832

0.66

0.43

0.0210

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5129

O-Antigen nucleotide sugar biosynthesis, and Glycosyl transferases group 1

8 of 28

2.14

5.64

4.67e-14

CL:5130

O-Antigen nucleotide sugar biosynthesis

7 of 23

2.16

5.09

3.32e-12

CL:5119

Amino sugar and nucleotide sugar metabolism, and Polysaccharide biosynthetic process

10 of 83

1.76

4.43

3.57e-15

CL:5117

Amino sugar and nucleotide sugar metabolism, and Polysaccharide biosynthetic process

11 of 101

1.72

4.4

2.67e-16

CL:5158

Mannose-6-phosphate isomerase, and NAD dependent epimerase/dehydratase family

3 of 6

2.38

2.29

4.59e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00541

O-Antigen nucleotide sugar biosynthesis

5 of 44

1.74

2.31

3.15e-06

map00520

Amino sugar and nucleotide sugar metabolism

4 of 68

1.45

1.3

0.00062

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0548

Nucleotidyltransferase

3 of 60

1.38

0.69

0.0329

KW-0808

Transferase

7 of 695

0.68

0.41

0.0329

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