STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ52972.1Lipopolysaccharide kinase (Kdo/WaaP) family protein. (265 aa)    
Predicted Functional Partners:
SHI93592.1
Tetratricopeptide repeat-containing protein.
  
     0.689
SHJ52930.1
Heptosyltransferase-2.
 
    0.623
SHJ52996.1
N-terminal domain of galactosyltransferase.
 
  
  0.619
SHJ16617.1
Glycosyl transferase family 2.
  
  
  0.608
SHI96207.1
Hypothetical protein.
  
     0.593
SHI82445.1
Hypothetical protein.
  
     0.590
SHI95603.1
Hypothetical protein.
  
     0.581
SHJ16634.1
Hypothetical protein.
 
     0.554
SHI33284.1
4-hydroxybenzoate polyprenyltransferase.
  
     0.541
SHJ56014.1
Effector-binding domain-containing protein.
  
     0.531
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.