STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ57947.1Collagen triple helix repeat-containing protein. (436 aa)    
Predicted Functional Partners:
SHJ65676.1
Hypothetical protein.
 
      0.808
SHJ23416.1
Glycerophosphoryl diester phosphodiesterase.
   
  0.450
SHJ65639.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.431
SHI30879.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.404
SHI70113.1
C-terminal domain of CHU protein family protein.
  
     0.400
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.