STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ58601.1AraC-type DNA-binding protein. (288 aa)    
Predicted Functional Partners:
SHJ38997.1
AraC-type DNA-binding protein.
  
  
  0.773
SHJ28644.1
AraC-type DNA-binding protein.
  
     0.760
SHJ39725.1
Transcriptional regulator, AraC family.
  
     0.760
SHJ09807.1
Transcriptional regulator, AraC family.
  
     0.757
SHJ21068.1
AraC family transcriptional regulator.
  
     0.753
SHI91285.1
AraC-type DNA-binding protein.
  
     0.738
SHJ28732.1
Helix-turn-helix domain-containing protein.
  
     0.734
SHJ10253.1
Transcriptional regulator, AraC family.
  
     0.729
SHJ11847.1
Transcriptional regulator, AraC family.
  
     0.708
SHJ54051.1
Transcriptional regulator, AraC family.
  
     0.611
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.