STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ59524.1Hypothetical protein. (233 aa)    
Predicted Functional Partners:
SHJ24015.1
Hypothetical protein.
  
     0.775
SHI38744.1
Gliding motility-associated C-terminal domain-containing protein.
  
   0.632
SHJ66951.1
Por secretion system C-terminal sorting domain-containing protein.
  
   0.618
SHJ18703.1
Hypothetical protein.
  
   0.595
SHJ54238.1
Hypothetical protein.
  
   0.587
SHI41465.1
Hypothetical protein.
  
     0.568
SHJ59503.1
Hypothetical protein.
       0.550
SHJ59547.1
Protein of unknown function (DU1801).
       0.539
SHI64168.1
Hypothetical protein.
  
     0.531
SHJ50219.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
  
   0.516
Your Current Organism:
Aquimarina spongiae
NCBI taxonomy Id: 570521
Other names: A. spongiae, Aquimarina spongiae Yoon et al. 2011 emend. Park et al. 2013, DSM 22623, Flavobacteriaceae bacterium A6, KCTC 22663, strain A6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.